Package index • OncoBayes2

Package overview

Global options and references

blrm_exnex() print(<blrmfit>): Bayesian Logistic Regression Model for N-compounds with EXNEX
blrm_trial() print(<blrm_trial>): Dose-Escalation Trials guided by Bayesian Logistic Regression Model
update(<blrm_trial>): Update data and/or prior of a BLRM trial
update(<blrmfit>): Update data of a BLRM analysis

blrm_formula_linear(): Build a BLRM formula with linear interaction term in logit-space
blrm_formula_saturating(): Build a BLRM formula with saturating interaction term in logit-space

summary(<blrm_trial>): Summarise trial
summary(<blrmfit>): Summarise model results
prior_summary(<blrmfit>): Summarise model prior
posterior_interval(<blrmfit>): Posterior intervals
posterior_linpred(<blrmfit>): Posterior of linear predictor
posterior_predict(<blrmfit>): Posterior of predictive
predictive_interval(<blrmfit>): Posterior predictive intervals
plot_toxicity_curve() plot_toxicity_intervals() plot_toxicity_intervals_stacked(): Plot a fitted model
critical_quantile(): Critical quantile
log_posterior(<blrmfit>) nuts_params(<blrmfit>) rhat(<blrmfit>) neff_ratio(<blrmfit>): Extract Diagnostic Quantities of OncoBayes2 Models
as_draws(<blrmfit>) as_draws_matrix(<blrmfit>) as_draws_array(<blrmfit>) as_draws_df(<blrmfit>) as_draws_list(<blrmfit>) as_draws_rvars(<blrmfit>) as_draws(<blrm_trial>) as_draws_matrix(<blrm_trial>) as_draws_array(<blrm_trial>) as_draws_df(<blrm_trial>) as_draws_list(<blrm_trial>) as_draws_rvars(<blrm_trial>) experimental: Transform blrmfit or blrm_trial to draws objects

hist_SA: Single-agent example
hist_combo2: Dataset: historical data on two single-agents to inform a combination study
codata_combo2: Dataset: historical and concurrent data on a two-way combination
hist_combo3: Dataset: historical and concurrent data on a three-way combination
drug_info_combo2: Dataset: drug information for a dual-agent combination study
dose_info_combo2: Dataset: trial dose information for a dual-agent combination study