get.marker() is deprecated. Use get.pbDE(.mode = "marker") instead.
Usage
get.marker(
.tdr.obj,
.geneset.ls = NULL,
.id1.idx = NULL,
.id2.idx = NULL,
.id1 = NULL,
.id2 = "..all.other.landmarks..",
.id.from = "clustering",
.label.confidence = 0.5
)Arguments
- .tdr.obj
A tinydenseR object processed through
get.map().- .geneset.ls
Optional named list of character vectors for GSVA.
- .id1.idx
Optional landmark indices for group 1.
- .id2.idx
Optional landmark indices for group 2.
- .id1
Cluster/celltype IDs for group 1.
- .id2
Reference group IDs. Default
"..all.other.landmarks..".- .id.from
"clustering" or "celltyping".
- .label.confidence
Numeric (0-1): minimum confidence for cell assignment (default: 0.5).