Refresh all celltyping-dependent slots

Inspects the TDRObj and updates every populated celltyping-dependent slot. This is called at the end of celltyping() so that late-bound celltyping (after get.map()) produces a fully consistent object.

Usage

.refresh_celltyping(.tdr.obj, .verbose = FALSE)

Arguments

.tdr.obj

A TDRObj with @landmark.annot$celltyping$ids already set to the new values.

.verbose

Logical; print progress messages.

Value

The modified .tdr.obj.

Details

Slots that have not yet been computed (e.g. get.map() has not run) are simply skipped — the object remains valid at whatever pipeline stage it is in.